•  Protein fold visualization
•  Cambridge structural database
• Maestro and Macromodel
•  Molecular Dynamics
•  Homology in gene sequences

NMR

•  Mathematica simulation of NMR spectra
•  Assignment of solution NMR spectra of Proteins

•  Monte Carlo study of the beta turn
•  Constrained MD using NMR distance constraints
•  MD study of protein dynamics
•  Calculation of amino-acid partial charges
•  QM study of the hydrolysis of an amide
•  Protein Electrostatics

•   Introduction to protein structure
•   Molecular Mechanics and MD
•  DNA binding proteins
  
•  HIV protease